Package: superb 0.95.16

superb: Summary Plots with Adjusted Error Bars

Computes standard error and confidence interval of various descriptive statistics under various designs and sampling schemes. The main function, superbPlot(), return a plot. superbData() returns a dataframe with the statistic and its precision interval so that other plotting package can be used. See Cousineau and colleagues (2021) <doi:10.1177/25152459211035109> or Cousineau (2017) <doi:10.5709/acp-0214-z> for a review as well as Cousineau (2005) <doi:10.20982/tqmp.01.1.p042>, Morey (2008) <doi:10.20982/tqmp.04.2.p061>, Baguley (2012) <doi:10.3758/s13428-011-0123-7>, Cousineau & Laurencelle (2016) <doi:10.1037/met0000055>, Cousineau & O'Brien (2014) <doi:10.3758/s13428-013-0441-z>, Calderini & Harding <doi:10.20982/tqmp.15.1.p001> for specific references.

Authors:Denis Cousineau [aut, cre], Bradley Harding [ctb], Marc-Andre Goulet [ctb], Jesika Walker [art, pre]

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superb.pdf |superb.html
superb/json (API)
NEWS

# Install 'superb' in R:
install.packages('superb', repos = c('https://dcousin3.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/dcousin3/superb/issues

Datasets:

On CRAN:

error-barsplottingstatisticssummary-plotssummary-statisticsvisualization

82 exports 18 stars 2.52 score 59 dependencies 2 dependents 85 scripts 728 downloads

Last updated 4 days agofrom:87270d7e9d. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 14 2024
R-4.5-winOKSep 14 2024
R-4.5-linuxOKSep 14 2024
R-4.4-winOKSep 14 2024
R-4.4-macOKSep 14 2024
R-4.3-winOKSep 14 2024
R-4.3-macOKSep 14 2024

Exports:biasCorrectionTransformbootstrapPI.gmeanbootstrapPI.hmeanbootstrapPI.meanbootstrapPI.medianbootstrapPI.sdbootstrapPI.varbootstrapSE.gmeanbootstrapSE.hmeanbootstrapSE.meanbootstrapSE.medianbootstrapSE.sdbootstrapSE.varCI.fisherkurtosisCI.fisherskewCI.gmeanCI.hmeanCI.IQRCI.MADCI.meanCI.meanNArmCI.medianCI.pearsonskewCI.sdCI.varCIwithDF.meanCousineauLaurencelleLambdacustomextentfisherkurtosisfisherskewgeom_superberrorbargmeanGRDhmeanHyunhFeldtEpsilonMADmakeTransparentMauchlySphericityTestmeanNArmpearsonskewpoolSDTransformRexpressionrunDebugSE.fisherkurtosisSE.fisherskewSE.gmeanSE.hmeanSE.IQRSE.MADSE.meanSE.meanNArmSE.medianSE.pearsonskewSE.sdSE.varshowHorizontalSignificanceshowSignificanceshowVerticalSignificanceShroutFleissICC1ShroutFleissICC11ShroutFleissICC1kslopesubjectCenteringTransformsuperbDatasuperbPlotsuperbPlot.barsuperbPlot.boxplotsuperbPlot.corsetsuperbPlot.halfwidthlinesuperbPlot.linesuperbPlot.lineBandsuperbPlot.pointsuperbPlot.pointindividuallinesuperbPlot.pointjittersuperbPlot.pointjitterviolinsuperbPlot.raincloudsuperbShinysuperbToWidetwoStepTransformWelchDegreeOfFreedomWinerCompoundSymmetryTest

Dependencies:base64encbslibcachemclicolorspacecommonmarkcrayondigestfansifarverfastmapfontawesomeforeignfsggplot2gluegtablehtmltoolshttpuvisobandjquerylibjsonlitelabelinglaterlatticelifecyclelsrmagrittrMASSMatrixmemoisemgcvmimemunsellnlmepillarpkgconfigplyrpromisesR6rappdirsrbibutilsRColorBrewerRcppRdpackrlangsassscalesshinyshinyBSsourcetoolsstringistringrtibbleutf8vctrsviridisLitewithrxtable

(advanced) Alternate ways to decorrelate repeated measures from transformations

Rendered fromVignette8.Rmdusingknitr::rmarkdownon Sep 14 2024.

Last update: 2022-09-09
Started: 2021-04-10

(advanced) Local decorrelation for time series

Rendered fromVignetteG.Rmdusingknitr::rmarkdownon Sep 14 2024.

Last update: 2024-08-04
Started: 2024-05-06

(advanced) Non-factorial within-subject designs in superb

Rendered fromVignetteB.Rmdusingknitr::rmarkdownon Sep 14 2024.

Last update: 2023-01-20
Started: 2021-05-27

superb and SPSS

Rendered fromVignetteD.Rmdusingknitr::rmarkdownon Sep 14 2024.

Last update: 2024-02-09
Started: 2021-10-19

Adding labels to superb plots

Rendered fromVignetteE.Rmdusingknitr::rmarkdownon Sep 14 2024.

Last update: 2022-12-19
Started: 2022-11-18

Customizing superb plots

Rendered fromCustomizingSuperbPlots.Rmdusingknitr::rmarkdownon Sep 14 2024.

Last update: 2023-08-13
Started: 2022-04-12

Generating ready-to-analyze datasets with GRD

Rendered fromVignette6.Rmdusingknitr::rmarkdownon Sep 14 2024.

Last update: 2022-09-09
Started: 2021-03-06

Plotting Cohen's d with superb

Rendered fromVignette9.Rmdusingknitr::rmarkdownon Sep 14 2024.

Last update: 2023-01-20
Started: 2021-04-29

Plotting frequencies using superb

Rendered fromVignetteF.Rmdusingknitr::rmarkdownon Sep 14 2024.

Last update: 2024-02-09
Started: 2022-12-19

Plotting proportions with superb

Rendered fromVignetteC.Rmdusingknitr::rmarkdownon Sep 14 2024.

Last update: 2024-08-04
Started: 2021-07-20

Plotting Reference Intervals with superb

Rendered fromVignetteA.Rmdusingknitr::rmarkdownon Sep 14 2024.

Last update: 2023-08-13
Started: 2021-05-26

The making-of the figures in the article

Rendered fromTheMakingOf.Rmdusingknitr::rmarkdownon Sep 14 2024.

Last update: 2024-08-17
Started: 2021-04-03

Three steps to make your plot

Rendered fromVignette1.Rmdusingknitr::rmarkdownon Sep 14 2024.

Last update: 2022-12-19
Started: 2021-03-06

Unequal variances, Welch test, Tryon adjustment, and superb

Rendered fromVignette7.Rmdusingknitr::rmarkdownon Sep 14 2024.

Last update: 2023-01-20
Started: 2021-04-08

Using a custom plot layout within superb

Rendered fromVignette5.Rmdusingknitr::rmarkdownon Sep 14 2024.

Last update: 2024-02-09
Started: 2021-03-06

Using a custom statistic with its error bar within superb

Rendered fromVignette4.Rmdusingknitr::rmarkdownon Sep 14 2024.

Last update: 2023-01-20
Started: 2021-03-06

Why use correlation-adjusted confidence intervals?

Rendered fromVignette3.Rmdusingknitr::rmarkdownon Sep 14 2024.

Last update: 2024-02-09
Started: 2021-03-06

Why use difference-adjusted confidence intervals?

Rendered fromVignette2.Rmdusingknitr::rmarkdownon Sep 14 2024.

Last update: 2022-11-17
Started: 2021-03-06

Readme and manuals

Help Manual

Help pageTopics
bias-correction transformbiasCorrectionTransform
Bootstrapped measures of precisionbootstrapPI.gmean bootstrapPI.hmean bootstrapPI.mean bootstrapPI.median bootstrapPI.sd bootstrapPI.var bootstrapPrecisionMeasures bootstrapSE.gmean bootstrapSE.hmean bootstrapSE.mean bootstrapSE.median bootstrapSE.sd bootstrapSE.var
Cousineau-Laurencelle's lambda correction for cluster-randomized samplingCousineauLaurencelleLambda
Data for Figure 1dataFigure1
Data for Figure 2dataFigure2
Data for Figure 3dataFigure3
Data for Figure 4dataFigure4
geom_superberrorbar for expanded error bar displaysgeom_superberrorbar
Generate random dataGRD
Hyunh and Feldt's epsilon measure of sphericityHyunhFeldtEpsilon
makes ggplots with transparent elementsmakeTransparent
Mauchly's test of SphericityMauchlySphericityTest
Measures with missing dataCI.meanNArm meanNArm meanNArm, measuresWithMissingData SE.meanNArm
pooled standard deviation transformpoolSDTransform
Precision measuresCI.fisherkurtosis CI.fisherskew CI.gmean CI.hmean CI.IQR CI.MAD CI.mean CI.median CI.pearsonskew CI.sd CI.var precisionMeasures SE.fisherkurtosis SE.fisherskew SE.gmean SE.hmean SE.IQR SE.MAD SE.mean SE.median SE.pearsonskew SE.sd SE.var
Confidence intervals with custom degree of freedomCIwithDF.mean precisionMeasureWithCustomDF
runDebugrunDebug
Annotate significance of results on plotsshowHorizontalSignificance showSignificance showVerticalSignificance
Shrout and Fleiss intra-class correlation functionsShroutFleissICC1 ShroutFleissICC11 ShroutFleissICC1k
Effect descriptioncustom extent Rexpression slope
subject-centering transformsubjectCenteringTransform
Additional summary statisticsfisherkurtosis fisherskew gmean hmean MAD pearsonskew summaryStatistics
Obtain summary statistics with correct error bars.superbData
summary plot of any statistics with adjusted error bars.superbPlot
superbPlot 'bar' layoutsuperbPlot.bar
superbPlot 'boxplot' layoutsuperbPlot.boxplot
superbPlot 'corset' layoutsuperbPlot.corset
superbPlot 'halfwidthline' layoutsuperbPlot.halfwidthline
superbPlot 'line' layoutsuperbPlot.line
superbPlot 'lineBand' layoutsuperbPlot.lineBand
superbPlot 'point' layoutsuperbPlot.point
superbPlot point and individual-line layout for within-subject designsuperbPlot.pointindividualline
superbPlot point-and-jitter dots layoutsuperbPlot.pointjitter
superbPlot point, jitter and violin plot layoutsuperbPlot.pointjitterviolin
superbPlot 'raincloud' layoutsuperbPlot.raincloud
User Interface to get summary plot of any statistics with adjusted error bars.superbShiny
superbToWide: Reshape long data frame to wide, suitable for superbPlotsuperbToWide
Data of Tulving, Mandler, & Baumal, 1964 (reproduction of 2021)TMB1964r
two-step transform for subject centering and bias correctiontwoStepTransform
Welch's rectified degree of freedomWelchDegreeOfFreedom
Winer's test of compound symmetryWinerCompoundSymmetryTest