Package: superb 0.95.19

superb: Summary Plots with Adjusted Error Bars

Computes standard error and confidence interval of various descriptive statistics under various designs and sampling schemes. The main function, superbPlot(), return a plot. superbData() returns a dataframe with the statistic and its precision interval so that other plotting package can be used. See Cousineau and colleagues (2021) <doi:10.1177/25152459211035109> or Cousineau (2017) <doi:10.5709/acp-0214-z> for a review as well as Cousineau (2005) <doi:10.20982/tqmp.01.1.p042>, Morey (2008) <doi:10.20982/tqmp.04.2.p061>, Baguley (2012) <doi:10.3758/s13428-011-0123-7>, Cousineau & Laurencelle (2016) <doi:10.1037/met0000055>, Cousineau & O'Brien (2014) <doi:10.3758/s13428-013-0441-z>, Calderini & Harding <doi:10.20982/tqmp.15.1.p001> for specific references.

Authors:Denis Cousineau [aut, cre], Bradley Harding [ctb], Marc-Andre Goulet [ctb], Jesika Walker [art, pre]

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superb.pdf |superb.html✨
superb/json (API)
NEWS

# Install 'superb' in R:
install.packages('superb', repos = c('https://dcousin3.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/dcousin3/superb/issues

Datasets:

On CRAN:

error-barsplottingstatisticssummary-plotssummary-statisticsvisualization

9.22 score 19 stars 2 packages 118 scripts 541 downloads 97 exports 60 dependencies

Last updated 13 days agofrom:231296fd0a. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 10 2024
R-4.5-winOKNov 10 2024
R-4.5-linuxOKNov 10 2024
R-4.4-winOKNov 10 2024
R-4.4-macOKNov 10 2024
R-4.3-winOKNov 10 2024
R-4.3-macOKNov 10 2024

Exports:biasCorrectionTransformbootstrapPI.gmeanbootstrapPI.hmeanbootstrapPI.meanbootstrapPI.medianbootstrapPI.sdbootstrapPI.varbootstrapSE.gmeanbootstrapSE.hmeanbootstrapSE.meanbootstrapSE.medianbootstrapSE.sdbootstrapSE.varCI.fisherkurtosisCI.fisherskewCI.gmeanCI.hmeanCI.IQRCI.MADCI.meanCI.meanNArmCI.medianCI.pearsonskewCI.sdCI.varCIwithDF.meanCousineauLaurencelleLambdacustomextentfisherkurtosisfisherskewgeom_flat_violingeom_superberrorbargmeanGRDhas.cbind.termshas.crange.termshas.nested.termshmeanHyunhFeldtEpsilonin.formulais.formulais.one.sidedMADmakeTransparentMauchlySphericityTestmeanNArmpearsonskewpoolSDTransformRexpressionrunDebugSE.fisherkurtosisSE.fisherskewSE.gmeanSE.hmeanSE.IQRSE.MADSE.meanSE.meanNArmSE.medianSE.pearsonskewSE.sdSE.varshowHorizontalSignificanceshowSignificanceshowVerticalSignificanceShroutFleissICC1ShroutFleissICC11ShroutFleissICC1kslopesub.formulassubjectCenteringTransformsuperbsuperbDatasuperbPlotsuperbPlot.barsuperbPlot.boxplotsuperbPlot.circularlinesuperbPlot.circularlineBandsuperbPlot.circularpointsuperbPlot.circularpointjittersuperbPlot.circularpointlinejittersuperbPlot.corsetsuperbPlot.halfwidthlinesuperbPlot.linesuperbPlot.lineBandsuperbPlot.pointsuperbPlot.pointindividuallinesuperbPlot.pointjittersuperbPlot.pointjitterviolinsuperbPlot.pointlinejittersuperbPlot.raincloudsuperbShinysuperbToWidetwoStepTransformWelchDegreeOfFreedomWinerCompoundSymmetryTest

Dependencies:base64encbslibcachemclicolorspacecommonmarkcrayondigestfansifarverfastmapfontawesomeforeignfsggplot2gluegtablehtmltoolshttpuvisobandjquerylibjsonlitelabelinglaterlatticelifecyclelsrmagrittrMASSMatrixmemoisemgcvmimemunsellnlmepillarpkgconfigplyrpromisesR6rappdirsrbibutilsRColorBrewerRcppRdpackrlangrrapplysassscalesshinyshinyBSsourcetoolsstringistringrtibbleutf8vctrsviridisLitewithrxtable

(advanced) Alternate ways to decorrelate repeated measures from transformations

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Last update: 2024-09-24
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(advanced) Local decorrelation for time series

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Last update: 2024-09-24
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(advanced) Non-factorial within-subject designs in superb

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superb and SPSS

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Adding labels to superb plots

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Customizing superb plots

Rendered fromCustomizingSuperbPlots.Rmdusingknitr::rmarkdownon Nov 10 2024.

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Generating ready-to-analyze datasets with GRD

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Plotting Cohen's d with superb

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Plotting frequencies using superb

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Plotting proportions with superb

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Last update: 2024-11-10
Started: 2021-07-20

Plotting radar plots for illustrating profiles

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Plotting Reference Intervals with superb

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The making-of the figures in the article

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Three steps to make your plot

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Unequal variances, Welch test, Tryon adjustment, and superb

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Using a custom plot layout within superb

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Using a custom statistic with its error bar within superb

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Why use correlation-adjusted confidence intervals?

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Why use difference-adjusted confidence intervals?

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Last update: 2024-09-24
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Readme and manuals

Help Manual

Help pageTopics
bias-correction transformbiasCorrectionTransform
Bootstrapped measures of precisionbootstrapPI.gmean bootstrapPI.hmean bootstrapPI.mean bootstrapPI.median bootstrapPI.sd bootstrapPI.var bootstrapPrecisionMeasures bootstrapSE.gmean bootstrapSE.hmean bootstrapSE.mean bootstrapSE.median bootstrapSE.sd bootstrapSE.var
Cousineau-Laurencelle's lambda correction for cluster-randomized samplingCousineauLaurencelleLambda
Data for Figure 1dataFigure1
Data for Figure 2dataFigure2
Data for Figure 3dataFigure3
Data for Figure 4dataFigure4
geom_flat_violin for expanded density displaysgeom_flat_violin
geom_superberrorbar for expanded error bar displaysgeom_superberrorbar
Generate random dataGRD
Hyunh and Feldt's epsilon measure of sphericityHyunhFeldtEpsilon
logical functions for formulashas.cbind.terms has.crange.terms has.nested.terms in.formula is.formula is.one.sided sub.formulas
makes ggplots with transparent elementsmakeTransparent
Mauchly's test of SphericityMauchlySphericityTest
Measures with missing dataCI.meanNArm meanNArm meanNArm, measuresWithMissingData SE.meanNArm
pooled standard deviation transformpoolSDTransform
Precision measuresCI.fisherkurtosis CI.fisherskew CI.gmean CI.hmean CI.IQR CI.MAD CI.mean CI.median CI.pearsonskew CI.sd CI.var precisionMeasures SE.fisherkurtosis SE.fisherskew SE.gmean SE.hmean SE.IQR SE.MAD SE.mean SE.median SE.pearsonskew SE.sd SE.var
Confidence intervals with custom degree of freedomCIwithDF.mean precisionMeasureWithCustomDF
runDebugrunDebug
Annotate significance of results on plotsshowHorizontalSignificance showSignificance showVerticalSignificance
Shrout and Fleiss intra-class correlation functionsShroutFleissICC1 ShroutFleissICC11 ShroutFleissICC1k
Effect descriptioncustom extent Rexpression slope
subject-centering transformsubjectCenteringTransform
Additional summary statisticsfisherkurtosis fisherskew gmean hmean MAD pearsonskew summaryStatistics
superbsuperb
Obtain summary statistics with correct error bars.superbData
summary plot of any statistics with adjusted error bars.superbPlot
superbPlot 'bar' layoutsuperbPlot.bar
superbPlot 'boxplot' layoutsuperbPlot.boxplot
superbPlot 'circularline' layoutsuperbPlot.circularline
superbPlot 'circularlineBand' layoutsuperbPlot.circularlineBand
superbPlot 'circularpoint' layoutsuperbPlot.circularpoint
superbPlot 'circularpointjitter' layoutsuperbPlot.circularpointjitter
superbPlot 'circularpointlinejitter' layoutsuperbPlot.circularpointlinejitter
superbPlot 'corset' layoutsuperbPlot.corset
superbPlot 'halfwidthline' layoutsuperbPlot.halfwidthline
superbPlot 'line' layoutsuperbPlot.line
superbPlot 'lineBand' layoutsuperbPlot.lineBand
superbPlot 'point' layoutsuperbPlot.point
superbPlot point and individual-line layout for within-subject designsuperbPlot.pointindividualline
superbPlot point-and-jitter dots layoutsuperbPlot.pointjitter
superbPlot point, jitter and violin plot layoutsuperbPlot.pointjitterviolin
superbPlot point-and-jitter lines layoutsuperbPlot.pointlinejitter
superbPlot 'raincloud' layoutsuperbPlot.raincloud
User Interface to get summary plot of any statistics with adjusted error bars.superbShiny
superbToWide: Reshape long data frame to wide, suitable for superbPlotsuperbToWide
Data of Tulving, Mandler, & Baumal, 1964 (reproduction of 2021)TMB1964r
two-step transform for subject centering and bias correctiontwoStepTransform
Welch's rectified degree of freedomWelchDegreeOfFreedom
Winer's test of compound symmetryWinerCompoundSymmetryTest